{
  "_id": "6a1229bcacfb0bcc41d0730f",
  "Package": "phenofit",
  "Type": "Package",
  "Title": "Extract Remote Sensing Vegetation Phenology",
  "Version": "0.3.11",
  "Authors@R": "c(\nperson(\"Dongdong\", \"Kong\", role = c(\"aut\", \"cre\"), email = \"kongdd.sysu@gmail.com\"),\nperson(\"Mingzhong\", \"Xiao\", role = c(\"aut\"), email = \"xmingzh@mail2.sysu.edu.cn\"),\nperson(\"Yongqiang\", \"Zhang\", role = c(\"aut\"), email = \"yongqiang.zhang2014@gmail.com\"),\nperson(\"Xihui\", \"Gu\", role = c(\"aut\"), email = \"guxh@cug.edu.cn\"),\nperson(\"Jianjian\", \"Cui\", role = c(\"aut\"), email = \"cuijj6@mail2.sysu.edu.cn\"))",
  "Description": "The merits of 'TIMESAT' and 'phenopix' are adopted.\nBesides, a simple and growing season dividing method and a\npractical snow elimination method based on Whittaker were\nproposed. 7 curve fitting methods and 4 phenology extraction\nmethods were provided. Parameters boundary are considered for\nevery curve fitting methods according to their ecological\nmeaning. And 'optimx' is used to select best optimization\nmethod for different curve fitting methods. Reference: Kong,\nD., (2020). R package: A state-of-the-art Vegetation Phenology\nextraction package, phenofit version 0.3.1,\n<doi:10.5281/zenodo.5150204>; Kong, D., Zhang, Y., Wang, D.,\nChen, J., & Gu, X. (2020). Photoperiod Explains the\nAsynchronization Between Vegetation Carbon Phenology and\nVegetation Greenness Phenology. Journal of Geophysical\nResearch: Biogeosciences, 125(8), e2020JG005636.\n<doi:10.1029/2020JG005636>; Kong, D., Zhang, Y., Gu, X., &\nWang, D. (2019). A robust method for reconstructing global\nMODIS EVI time series on the Google Earth Engine. ISPRS Journal\nof Photogrammetry and Remote Sensing, 155, 13–24; Zhang, Q.,\nKong, D., Shi, P., Singh, V.P., Sun, P., 2018. Vegetation\nphenology on the Qinghai-Tibetan Plateau and its response to\nclimate change (1982–2013). Agric. For. Meteorol. 248, 408–417.\n<doi:10.1016/j.agrformet.2017.10.026>.",
  "License": "GPL-2 | file LICENSE",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.3.3",
  "URL": "https://github.com/eco-hydro/phenofit",
  "BugReports": "https://github.com/eco-hydro/phenofit/issues",
  "Roxygen": "list(markdown = TRUE)",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "cmake libicu-dev",
  "Repository": "https://rpkgs.r-universe.dev",
  "Date/Publication": "2026-01-23 04:28:22 UTC",
  "RemoteUrl": "https://github.com/eco-hydro/phenofit",
  "RemoteRef": "HEAD",
  "RemoteSha": "e563f32d5953ccc2c8cf657fec95839d94249a76",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-23 22:20:36 UTC",
    "User": "root"
  },
  "Author": "Dongdong Kong [aut, cre],\nMingzhong Xiao [aut],\nYongqiang Zhang [aut],\nXihui Gu [aut],\nJianjian Cui [aut]",
  "Maintainer": "Dongdong Kong <kongdd.sysu@gmail.com>",
  "MD5sum": "0af95322a050a9a3e647417477af0ab7",
  "_user": "rpkgs",
  "_type": "src",
  "_file": "phenofit_0.3.11.tar.gz",
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  "_filesize": 3122851,
  "_sha256": "d41c7d7c42bf2002b8e28b8aaf2d1f42bc41d19ec32f314a91a98ed4aafd28ca",
  "_created": "2026-05-23T22:20:36.000Z",
  "_published": "2026-05-23T22:27:08.671Z",
  "_distro": "noble",
  "_jobs": [
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  "_buildurl": "https://github.com/r-universe/rpkgs/actions/runs/26325555501",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/eco-hydro/phenofit",
  "_commit": {
    "id": "e563f32d5953ccc2c8cf657fec95839d94249a76",
    "author": "Dongdong Kong <kongdd@users.noreply.github.com>",
    "committer": "Dongdong Kong <kongdd@users.noreply.github.com>",
    "message": "keep alive\n",
    "time": 1769142502
  },
  "_maintainer": {
    "name": "Dongdong Kong",
    "email": "kongdd.sysu@gmail.com",
    "login": "kongdd",
    "description": "Professor (Associate) At China University of Geosciences; \n公众号: eco-hydro",
    "uuid": 9815742
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.1",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "version": ">= 1.1.0",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "lubridate",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "zoo",
      "role": "Imports"
    },
    {
      "package": "gridExtra",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "optimx",
      "role": "Imports"
    },
    {
      "package": "ucminf",
      "role": "Imports"
    },
    {
      "package": "numDeriv",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "zeallot",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
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      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 2.1.0",
      "role": "Suggests"
    }
  ],
  "_owner": "eco-hydro",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-42",
      "n": 1
    },
    {
      "week": "2026-04",
      "n": 1
    }
  ],
  "_tags": [],
  "_topics": [
    "phenology",
    "remote-sensing",
    "openblas",
    "cpp",
    "openmp"
  ],
  "_stars": 87,
  "_contributors": [
    {
      "user": "kongdd",
      "count": 171,
      "uuid": 9815742
    },
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  "_userbio": {
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    "type": "organization",
    "name": "rpkgs",
    "description": "My peasonal R packages"
  },
  "_downloads": {
    "count": 430,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/phenofit"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/eco-hydro/phenofit",
  "_searchresults": 293,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/phenofit.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/eco-hydro/phenofit",
  "_realowner": "eco-hydro",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.2.0",
      "date": "2019-02-18"
    },
    {
      "version": "0.2.3",
      "date": "2019-05-23"
    },
    {
      "version": "0.2.4",
      "date": "2019-05-24"
    },
    {
      "version": "0.2.5-2",
      "date": "2019-06-07"
    },
    {
      "version": "0.2.7",
      "date": "2020-04-02"
    },
    {
      "version": "0.3.2",
      "date": "2021-10-15"
    },
    {
      "version": "0.3.6",
      "date": "2022-11-03"
    },
    {
      "version": "0.3.7",
      "date": "2022-11-07"
    },
    {
      "version": "0.3.8",
      "date": "2023-02-15"
    },
    {
      "version": "0.3.9",
      "date": "2024-01-23"
    },
    {
      "version": "0.3.10",
      "date": "2025-05-27"
    },
    {
      "version": "0.3.11",
      "date": "2026-01-23"
    }
  ],
  "_exports": [
    "%<-%",
    "%<>%",
    "%>%",
    "add_HeadTail",
    "brks2rfit",
    "check_input",
    "check_season_dt",
    "check_season_list",
    "check_ylu",
    "curvature",
    "curvefit",
    "curvefit0",
    "curvefits",
    "curvefits_LocalModel",
    "cv_coef",
    "D1",
    "D2",
    "date2doy",
    "doubleLog_AG",
    "doubleLog_Beck",
    "doubleLog_Elmore",
    "doubleLog_Gu",
    "doubleLog_Klos",
    "doubleLog_Zhang",
    "doubleLog.AG",
    "doubleLog.AG2",
    "doubleLog.Beck",
    "doubleLog.Elmore",
    "doubleLog.Gu",
    "doubleLog.Klos",
    "doubleLog.Zhang",
    "doy2date",
    "f_goal",
    "f_goal2",
    "find_season.default",
    "find_season.peaks",
    "findpeaks",
    "FitDL.AG",
    "FitDL.AG2",
    "FitDL.Beck",
    "FitDL.Elmore",
    "FitDL.Gu",
    "FitDL.Klos",
    "FitDL.Zhang",
    "get_fitting",
    "get_GOF",
    "get_options",
    "get_param",
    "get_pheno",
    "getBits",
    "getRealDate",
    "GOF",
    "I_optim",
    "I_optimx",
    "init_AG",
    "init_AG2",
    "init_Beck",
    "init_Elmore",
    "init_Gu",
    "init_Klos",
    "init_lambda",
    "init_param",
    "init_Zhang",
    "kurtosis",
    "lambda_vcurve",
    "logistic",
    "Logistic",
    "make_date",
    "melt_list",
    "merge_LocalModels",
    "movmean",
    "opt_nlm",
    "opt_nlminb",
    "opt_optim",
    "opt_ucminf",
    "optim_pheno",
    "PhenoDeriv",
    "PhenoGu",
    "PhenoKl",
    "PhenoTrs",
    "plot_curvefits",
    "plot_input",
    "plot_phenofit",
    "plot_season",
    "process_phenofit",
    "process_season",
    "qc_5l",
    "qc_colors",
    "qc_FparLai",
    "qc_levels",
    "qc_NDVI3g",
    "qc_NDVIv4",
    "qc_sentinel2",
    "qc_shapes",
    "qc_SPOT",
    "qc_StateQA",
    "qc_summary",
    "R2_sign",
    "rcpp_season_filter",
    "rcpp_SG",
    "rcpp_wSG",
    "removeClosedExtreme",
    "roughFit",
    "season",
    "season_input",
    "season_mov",
    "set_options",
    "skewness",
    "smooth_wHANTS",
    "smooth_wSG",
    "smooth_wWHIT",
    "tidy_MOD13",
    "tidy_pheno",
    "v_curve",
    "wBisquare",
    "wBisquare0",
    "wChen",
    "whit2",
    "wKong",
    "wSELF",
    "wTSM"
  ],
  "_datasets": [
    {
      "name": "CA_NS6",
      "title": "MOD13A1 EVI observations at flux site CA-NS6",
      "object": "CA_NS6",
      "class": [
        "data.table",
        "data.frame"
      ],
      "fields": [
        "site",
        "y",
        "date",
        "t",
        "w",
        "QC_flag"
      ],
      "rows": 161,
      "table": true,
      "tojson": true
    },
    {
      "name": "input_single",
      "title": "input object with one growing season per year",
      "object": "input_single",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "MOD13A1",
      "title": "MOD13A1",
      "object": "MOD13A1",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "CA_NS6",
      "title": "MOD13A1 EVI observations at flux site CA-NS6",
      "topics": [
        "CA_NS6"
      ]
    },
    {
      "page": "check_input",
      "title": "check_input",
      "topics": [
        "check_input"
      ]
    },
    {
      "page": "check_ylu",
      "title": "check_ylu",
      "topics": [
        "check_ylu"
      ]
    },
    {
      "page": "curvefit",
      "title": "Fine curve fitting",
      "topics": [
        "curvefit"
      ]
    },
    {
      "page": "curvefits",
      "title": "Fine Curve fitting",
      "topics": [
        "curvefits"
      ]
    },
    {
      "page": "curvefits_LocalModel",
      "title": "curvefits by local model functions of TIMESAT",
      "topics": [
        "curvefits_LocalModel",
        "merge_LocalModels"
      ]
    },
    {
      "page": "f_goal",
      "title": "Goal function of fine curve fitting methods",
      "topics": [
        "f_goal"
      ]
    },
    {
      "page": "findpeaks",
      "title": "findpeaks",
      "topics": [
        "findpeaks"
      ]
    },
    {
      "page": "FitDL",
      "title": "Fine fitting",
      "topics": [
        "FitDL",
        "FitDL.AG",
        "FitDL.AG2",
        "FitDL.Beck",
        "FitDL.Elmore",
        "FitDL.Gu",
        "FitDL.Klos",
        "FitDL.Zhang"
      ]
    },
    {
      "page": "get_fitting",
      "title": "getFittings",
      "topics": [
        "get_fitting",
        "get_fitting.fFITs",
        "get_fitting.list"
      ]
    },
    {
      "page": "get_GOF",
      "title": "get_GOF",
      "topics": [
        "get_GOF",
        "get_GOF.fFIT",
        "get_GOF.fFITs",
        "get_GOF.list"
      ]
    },
    {
      "page": "get_param",
      "title": "Get parameters from curve fitting result",
      "topics": [
        "get_param",
        "get_param.fFIT",
        "get_param.fFITs",
        "get_param.list"
      ]
    },
    {
      "page": "get_pheno",
      "title": "get_pheno",
      "topics": [
        "get_pheno",
        "get_pheno.fFITs",
        "get_pheno.list",
        "get_pheno.rfit"
      ]
    },
    {
      "page": "GOF",
      "title": "GOF",
      "topics": [
        "GOF"
      ]
    },
    {
      "page": "input_single",
      "title": "input object with one growing season per year",
      "topics": [
        "input_single"
      ]
    },
    {
      "page": "logistics",
      "title": "Fine fitting functions",
      "topics": [
        "doubleLog.AG",
        "doubleLog.AG2",
        "doubleLog.Beck",
        "doubleLog.Elmore",
        "doubleLog.Gu",
        "doubleLog.Klos",
        "doubleLog.Zhang",
        "Logistic"
      ]
    },
    {
      "page": "MOD13A1",
      "title": "MOD13A1",
      "topics": [
        "MOD13A1"
      ]
    },
    {
      "page": "movmean",
      "title": "movmean",
      "topics": [
        "movmean"
      ]
    },
    {
      "page": "opt_FUN",
      "title": "Unified optimization function",
      "topics": [
        "opt_FUN",
        "opt_nlm",
        "opt_nlminb",
        "opt_optim",
        "opt_ucminf"
      ]
    },
    {
      "page": "optim_pheno",
      "title": "optim_pheno",
      "topics": [
        "optim_pheno"
      ]
    },
    {
      "page": "PhenoDeriv",
      "title": "Phenology extraction in Derivative method (DER)",
      "topics": [
        "PhenoDeriv",
        "PhenoDeriv.default",
        "PhenoDeriv.fFIT"
      ]
    },
    {
      "page": "PhenoGu",
      "title": "Phenology extraction in GU method (GU)",
      "topics": [
        "PhenoGu",
        "PhenoGu.default",
        "PhenoGu.fFIT"
      ]
    },
    {
      "page": "PhenoKl",
      "title": "Phenology extraction in Inflection method (Zhang)",
      "topics": [
        "PhenoKl"
      ]
    },
    {
      "page": "PhenoTrs",
      "title": "Phenology extraction in Threshold method (TRS)",
      "topics": [
        "PhenoTrs",
        "PhenoTrs.default",
        "PhenoTrs.fFIT"
      ]
    },
    {
      "page": "plot_curvefits",
      "title": "plot_curvefits",
      "topics": [
        "plot_curvefits"
      ]
    },
    {
      "page": "plot_input",
      "title": "Plot INPUT returned by check_input",
      "topics": [
        "plot_input"
      ]
    },
    {
      "page": "plot_season",
      "title": "plot_season",
      "topics": [
        "plot_season"
      ]
    },
    {
      "page": "qc_sentinel2",
      "title": "Initial weights for sentinel2 according to SCL band",
      "topics": [
        "qc_sentinel2"
      ]
    },
    {
      "page": "qcFUN",
      "title": "Initial weights according to qc",
      "topics": [
        "getBits",
        "qcFUN",
        "qc_5l",
        "qc_FparLai",
        "qc_NDVI3g",
        "qc_NDVIv4",
        "qc_SPOT",
        "qc_StateQA",
        "qc_summary"
      ]
    },
    {
      "page": "rcpp_wSG",
      "title": "Weighted Savitzky-Golay written in RcppArmadillo",
      "topics": [
        "rcpp_SG",
        "rcpp_wSG"
      ]
    },
    {
      "page": "season_mov",
      "title": "Moving growing season division",
      "topics": [
        "season_mov"
      ]
    },
    {
      "page": "set_options",
      "title": "set and get phenofit option",
      "topics": [
        "get_options",
        "set_options"
      ]
    },
    {
      "page": "smooth_wHANTS",
      "title": "Weighted HANTS SMOOTH",
      "topics": [
        "smooth_wHANTS"
      ]
    },
    {
      "page": "smooth_wSG",
      "title": "Weighted Savitzky-Golay",
      "topics": [
        "smooth_wSG"
      ]
    },
    {
      "page": "smooth_wWHIT",
      "title": "Weigthed Whittaker Smoother",
      "topics": [
        "smooth_wWHIT"
      ]
    },
    {
      "page": "whit2",
      "title": "Weighted Whittaker smoothing with a second order finite difference penalty",
      "topics": [
        "whit2"
      ]
    },
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